MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Xanthomonas citri subsp. citri Aw12879 plasmid pXcaw58

Total Repeats: 143

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020817	CAA	2	6	51	56	66.67 %	0 %	0 %	33.33 %	Non-Coding
2	NC_020817	ATT	2	6	95	100	33.33 %	66.67 %	0 %	0 %	Non-Coding
3	NC_020817	CG	3	6	1141	1146	0 %	0 %	50 %	50 %	Non-Coding
4	NC_020817	CCG	2	6	1203	1208	0 %	0 %	33.33 %	66.67 %	Non-Coding
5	NC_020817	CGCTGC	2	12	1262	1273	0 %	16.67 %	33.33 %	50 %	Non-Coding
6	NC_020817	CGA	2	6	1277	1282	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
7	NC_020817	TGCG	2	8	1294	1301	0 %	25 %	50 %	25 %	Non-Coding
8	NC_020817	GCT	2	6	1304	1309	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
9	NC_020817	CGA	2	6	1375	1380	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
10	NC_020817	CCA	2	6	1408	1413	33.33 %	0 %	0 %	66.67 %	Non-Coding
11	NC_020817	AGT	2	6	1690	1695	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12	NC_020817	ATT	2	6	1717	1722	33.33 %	66.67 %	0 %	0 %	Non-Coding
13	NC_020817	GCTTC	3	15	2650	2664	0 %	40 %	20 %	40 %	Non-Coding
14	NC_020817	CTGG	2	8	2679	2686	0 %	25 %	50 %	25 %	Non-Coding
15	NC_020817	GAC	2	6	2687	2692	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
16	NC_020817	ATC	2	6	2735	2740	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
17	NC_020817	TGCC	2	8	2741	2748	0 %	25 %	25 %	50 %	Non-Coding
18	NC_020817	GTT	2	6	2819	2824	0 %	66.67 %	33.33 %	0 %	Non-Coding
19	NC_020817	GGCGCT	2	12	2879	2890	0 %	16.67 %	50 %	33.33 %	Non-Coding
20	NC_020817	CGC	2	6	2910	2915	0 %	0 %	33.33 %	66.67 %	Non-Coding
21	NC_020817	GC	3	6	2926	2931	0 %	0 %	50 %	50 %	Non-Coding
22	NC_020817	CGG	2	6	2987	2992	0 %	0 %	66.67 %	33.33 %	Non-Coding
23	NC_020817	GCT	2	6	3200	3205	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
24	NC_020817	CGT	2	6	3295	3300	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
25	NC_020817	TCC	2	6	3336	3341	0 %	33.33 %	0 %	66.67 %	Non-Coding
26	NC_020817	GGT	2	6	3356	3361	0 %	33.33 %	66.67 %	0 %	Non-Coding
27	NC_020817	GCG	2	6	3362	3367	0 %	0 %	66.67 %	33.33 %	Non-Coding
28	NC_020817	CGCC	2	8	3391	3398	0 %	0 %	25 %	75 %	Non-Coding
29	NC_020817	GGCG	2	8	3568	3575	0 %	0 %	75 %	25 %	Non-Coding
30	NC_020817	TGG	2	6	3664	3669	0 %	33.33 %	66.67 %	0 %	Non-Coding
31	NC_020817	GACG	2	8	3710	3717	25 %	0 %	50 %	25 %	Non-Coding
32	NC_020817	GC	3	6	3732	3737	0 %	0 %	50 %	50 %	Non-Coding
33	NC_020817	TAC	2	6	3838	3843	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
34	NC_020817	AGG	2	6	4553	4558	33.33 %	0 %	66.67 %	0 %	Non-Coding
35	NC_020817	GCGGT	2	10	4850	4859	0 %	20 %	60 %	20 %	Non-Coding
36	NC_020817	CG	3	6	4876	4881	0 %	0 %	50 %	50 %	Non-Coding
37	NC_020817	CTGGA	2	10	4943	4952	20 %	20 %	40 %	20 %	Non-Coding
38	NC_020817	TTG	2	6	9124	9129	0 %	66.67 %	33.33 %	0 %	Non-Coding
39	NC_020817	CGG	2	6	9235	9240	0 %	0 %	66.67 %	33.33 %	Non-Coding
40	NC_020817	CGA	2	6	9247	9252	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
41	NC_020817	CGG	2	6	9299	9304	0 %	0 %	66.67 %	33.33 %	Non-Coding
42	NC_020817	CGA	2	6	9305	9310	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
43	NC_020817	CAG	2	6	10313	10318	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
44	NC_020817	TA	3	6	10355	10360	50 %	50 %	0 %	0 %	Non-Coding
45	NC_020817	GC	5	10	10895	10904	0 %	0 %	50 %	50 %	Non-Coding
46	NC_020817	GCG	2	6	11031	11036	0 %	0 %	66.67 %	33.33 %	Non-Coding
47	NC_020817	GGC	2	6	11041	11046	0 %	0 %	66.67 %	33.33 %	Non-Coding
48	NC_020817	TTC	2	6	11057	11062	0 %	66.67 %	0 %	33.33 %	Non-Coding
49	NC_020817	TCA	2	6	11117	11122	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
50	NC_020817	GCT	3	9	11169	11177	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
51	NC_020817	CGA	2	6	11186	11191	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
52	NC_020817	TGC	2	6	11210	11215	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
53	NC_020817	GGA	2	6	11233	11238	33.33 %	0 %	66.67 %	0 %	Non-Coding
54	NC_020817	GAAG	2	8	12017	12024	50 %	0 %	50 %	0 %	Non-Coding
55	NC_020817	AAC	2	6	12064	12069	66.67 %	0 %	0 %	33.33 %	Non-Coding
56	NC_020817	AGT	2	6	12130	12135	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
57	NC_020817	AGCC	2	8	12140	12147	25 %	0 %	25 %	50 %	Non-Coding
58	NC_020817	TCG	2	6	12183	12188	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
59	NC_020817	A	6	6	12514	12519	100 %	0 %	0 %	0 %	Non-Coding
60	NC_020817	TCC	2	6	12578	12583	0 %	33.33 %	0 %	66.67 %	Non-Coding
61	NC_020817	GTC	2	6	12625	12630	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
62	NC_020817	GTAA	2	8	16367	16374	50 %	25 %	25 %	0 %	Non-Coding
63	NC_020817	TAA	2	6	17398	17403	66.67 %	33.33 %	0 %	0 %	Non-Coding
64	NC_020817	TTG	2	6	17443	17448	0 %	66.67 %	33.33 %	0 %	Non-Coding
65	NC_020817	A	9	9	17518	17526	100 %	0 %	0 %	0 %	Non-Coding
66	NC_020817	GA	3	6	17572	17577	50 %	0 %	50 %	0 %	Non-Coding
67	NC_020817	CAA	2	6	21243	21248	66.67 %	0 %	0 %	33.33 %	Non-Coding
68	NC_020817	CAA	2	6	21255	21260	66.67 %	0 %	0 %	33.33 %	Non-Coding
69	NC_020817	GAA	2	6	21648	21653	66.67 %	0 %	33.33 %	0 %	Non-Coding
70	NC_020817	TGC	2	6	21667	21672	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
71	NC_020817	TGATCC	2	12	21698	21709	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
72	NC_020817	TTAC	2	8	22457	22464	25 %	50 %	0 %	25 %	Non-Coding
73	NC_020817	CGA	2	6	26107	26112	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
74	NC_020817	CGC	2	6	26716	26721	0 %	0 %	33.33 %	66.67 %	Non-Coding
75	NC_020817	GCG	2	6	26737	26742	0 %	0 %	66.67 %	33.33 %	Non-Coding
76	NC_020817	GC	3	6	26811	26816	0 %	0 %	50 %	50 %	Non-Coding
77	NC_020817	GCT	2	6	26821	26826	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
78	NC_020817	GCC	2	6	26889	26894	0 %	0 %	33.33 %	66.67 %	Non-Coding
79	NC_020817	GCCG	2	8	26973	26980	0 %	0 %	50 %	50 %	Non-Coding
80	NC_020817	CTT	2	6	27962	27967	0 %	66.67 %	0 %	33.33 %	Non-Coding
81	NC_020817	CGC	2	6	28019	28024	0 %	0 %	33.33 %	66.67 %	Non-Coding
82	NC_020817	CGC	2	6	28071	28076	0 %	0 %	33.33 %	66.67 %	Non-Coding
83	NC_020817	AG	3	6	28924	28929	50 %	0 %	50 %	0 %	Non-Coding
84	NC_020817	TCA	2	6	28958	28963	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
85	NC_020817	TGCC	2	8	28988	28995	0 %	25 %	25 %	50 %	Non-Coding
86	NC_020817	CTT	2	6	29088	29093	0 %	66.67 %	0 %	33.33 %	Non-Coding
87	NC_020817	GCC	2	6	29137	29142	0 %	0 %	33.33 %	66.67 %	Non-Coding
88	NC_020817	GCG	2	6	31083	31088	0 %	0 %	66.67 %	33.33 %	Non-Coding
89	NC_020817	GCC	2	6	31100	31105	0 %	0 %	33.33 %	66.67 %	Non-Coding
90	NC_020817	AGGA	2	8	31340	31347	50 %	0 %	50 %	0 %	Non-Coding
91	NC_020817	C	6	6	32633	32638	0 %	0 %	0 %	100 %	Non-Coding
92	NC_020817	TCGAT	2	10	32639	32648	20 %	40 %	20 %	20 %	Non-Coding
93	NC_020817	C	6	6	32695	32700	0 %	0 %	0 %	100 %	Non-Coding
94	NC_020817	C	7	7	32775	32781	0 %	0 %	0 %	100 %	Non-Coding
95	NC_020817	TA	4	8	32815	32822	50 %	50 %	0 %	0 %	Non-Coding
96	NC_020817	GAC	2	6	33176	33181	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
97	NC_020817	ACT	2	6	33223	33228	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
98	NC_020817	CGG	2	6	35130	35135	0 %	0 %	66.67 %	33.33 %	Non-Coding
99	NC_020817	TAGCG	2	10	35769	35778	20 %	20 %	40 %	20 %	Non-Coding
100	NC_020817	C	6	6	35793	35798	0 %	0 %	0 %	100 %	Non-Coding
101	NC_020817	GAG	2	6	35845	35850	33.33 %	0 %	66.67 %	0 %	Non-Coding
102	NC_020817	G	6	6	36970	36975	0 %	0 %	100 %	0 %	Non-Coding
103	NC_020817	TCG	2	6	36984	36989	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
104	NC_020817	ACCC	2	8	37972	37979	25 %	0 %	0 %	75 %	Non-Coding
105	NC_020817	CAG	2	6	39843	39848	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
106	NC_020817	CCA	2	6	39860	39865	33.33 %	0 %	0 %	66.67 %	Non-Coding
107	NC_020817	ACAA	2	8	39934	39941	75 %	0 %	0 %	25 %	Non-Coding
108	NC_020817	GCCG	2	8	40370	40377	0 %	0 %	50 %	50 %	Non-Coding
109	NC_020817	GCC	2	6	40388	40393	0 %	0 %	33.33 %	66.67 %	Non-Coding
110	NC_020817	CGC	2	6	40418	40423	0 %	0 %	33.33 %	66.67 %	Non-Coding
111	NC_020817	CGG	2	6	41166	41171	0 %	0 %	66.67 %	33.33 %	Non-Coding
112	NC_020817	CCGG	2	8	41174	41181	0 %	0 %	50 %	50 %	Non-Coding
113	NC_020817	CGGC	2	8	41196	41203	0 %	0 %	50 %	50 %	Non-Coding
114	NC_020817	ACC	2	6	41209	41214	33.33 %	0 %	0 %	66.67 %	Non-Coding
115	NC_020817	C	8	8	42183	42190	0 %	0 %	0 %	100 %	Non-Coding
116	NC_020817	GCC	2	6	42560	42565	0 %	0 %	33.33 %	66.67 %	Non-Coding
117	NC_020817	GCC	2	6	42599	42604	0 %	0 %	33.33 %	66.67 %	Non-Coding
118	NC_020817	GGC	2	6	42608	42613	0 %	0 %	66.67 %	33.33 %	Non-Coding
119	NC_020817	GCG	2	6	42614	42619	0 %	0 %	66.67 %	33.33 %	Non-Coding
120	NC_020817	CTTT	2	8	42810	42817	0 %	75 %	0 %	25 %	Non-Coding
121	NC_020817	GCT	2	6	42858	42863	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
122	NC_020817	CGG	2	6	42876	42881	0 %	0 %	66.67 %	33.33 %	Non-Coding
123	NC_020817	CGG	2	6	42956	42961	0 %	0 %	66.67 %	33.33 %	Non-Coding
124	NC_020817	CCCTT	2	10	43740	43749	0 %	40 %	0 %	60 %	Non-Coding
125	NC_020817	CGG	2	6	43762	43767	0 %	0 %	66.67 %	33.33 %	Non-Coding
126	NC_020817	TCGG	2	8	43826	43833	0 %	25 %	50 %	25 %	Non-Coding
127	NC_020817	CGA	2	6	45164	45169	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
128	NC_020817	CCGC	2	8	45173	45180	0 %	0 %	25 %	75 %	Non-Coding
129	NC_020817	CGT	2	6	45226	45231	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
130	NC_020817	CG	3	6	45251	45256	0 %	0 %	50 %	50 %	Non-Coding
131	NC_020817	GCA	2	6	50483	50488	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
132	NC_020817	GCA	2	6	50536	50541	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
133	NC_020817	CAG	2	6	50548	50553	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
134	NC_020817	GGA	2	6	50559	50564	33.33 %	0 %	66.67 %	0 %	Non-Coding
135	NC_020817	TTC	2	6	50634	50639	0 %	66.67 %	0 %	33.33 %	Non-Coding
136	NC_020817	ACC	2	6	50746	50751	33.33 %	0 %	0 %	66.67 %	Non-Coding
137	NC_020817	GCC	2	6	50758	50763	0 %	0 %	33.33 %	66.67 %	Non-Coding
138	NC_020817	CGC	2	6	50768	50773	0 %	0 %	33.33 %	66.67 %	Non-Coding
139	NC_020817	AGC	2	6	52998	53003	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
140	NC_020817	GGC	2	6	53409	53414	0 %	0 %	66.67 %	33.33 %	Non-Coding
141	NC_020817	GCA	2	6	53775	53780	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
142	NC_020817	CT	3	6	58238	58243	0 %	50 %	0 %	50 %	Non-Coding
143	NC_020817	T	9	9	58290	58298	0 %	100 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.